Septic Tank Pumping in Clay County, FL
Septic tank pumping typically runs $297–$584 nationally, per our cost guide. Independent local pros serving Middleburg, Green Cove Springs (unsewered areas), Keystone Heights and nearby communities. Describe the problem and we'll route your request — free, no obligation.
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Typical national cost$297 – $584Cost guide →Local Help in Clay County, FL
The Florida Department of Health in Clay County (DOH-Clay) still takes septic applications, issues permits and inspects the work. Its onsite page explains that DEP has been responsible for the state's septic statutes and rules since 2021, but that some county health departments, DOH-Clay among them, will keep permitting until the transfer to DEP is complete. DEP's permitting FAQ lists Clay with the counties served by the local health department and says the move of the remaining 50 counties depends on legislative approval.
How many homes are on septic? The Florida Water Management Inventory map for Clay, finished in 2022, puts 8,604 parcels in its known-septic class and 12,662 in likely-septic, next to 46,153 known-sewer parcels and 9,714 with no data.
Census Table B25034 (ACS 2024, one-year) puts Clay's housing stock at 93,080 units. The 2000s account for the most units, 22,613, followed by 16,439 from the 1990s and 15,627 from the 1980s.
Clay County Service Details
What providers in this area actually see: coverage, common jobs, local pricing factors, and rules worth knowing.
Service Area Notes
- Clay's incorporated places are Green Cove Springs, the county seat, Keystone Heights, Orange Park and Penney Farms. Middleburg, Fleming Island, Asbury Lake, Lakeside, Oakleaf Plantation and Bellair-Meadowbrook Terrace are Census-designated places, not cities.
- The Clay County Utility Authority (CCUA) publishes a service-area map, and its fee list sets a wastewater connection charge of $4,488.74 per equivalent residential connection, excluding Keystone connections included in FDEP Grant SG481030 and LP0512.
- Requests are taken county-wide. Say whether the house is on CCUA or city sewer or has its own tank, and whether the system is an aerobic unit, which DOH-Clay keeps under an operating permit.
Common Jobs in Clay County
- Routine pump-outs on a three-to-five-year cycle
- Aerobic unit service tied to a DOH-Clay operating permit
- Pumping a tank before it is abandoned for a sewer connection
- Finding a tank and drain field for the site plan that a permit application requires
- Checks on wet flatwoods lots with a water table near the surface
- Backups and high-water alarms
What Drives Pricing Here
- According to UF/IFAS, pumping a septic tank in Florida generally costs $250 to $400, varying by region; the same sheet says fixing or replacing a system that failed from neglect may run $3,000 to $10,000.
- Third-party estimate: HomeAdvisor's septic pumping guide (updated June 17, 2026) lists $245 to $435 for Jacksonville, the only Florida city in its table, compared with $292–$565 nationally.
- Tank size: Rule 62-6.008, F.A.C. rates a three-bedroom home of 1,201 to 2,250 square feet at 300 gallons a day in Table I, and Table II sets a 900-gallon minimum tank for 201 to 300 gallons a day and 1,050 gallons for 301 to 400.
- If the pump-out reveals a failure, the state's base charges in Rule 62-6.030 (effective June 8, 2026) start with a $50 evaluation. A permit adds $55 and a $5 surcharge, an inspection $75, and each reinspection $50. DOH-Clay notes that what you actually pay, county fees included, depends on the system type and services.
- Disposal: CCUA's fee list charges $121.00 per 1,000 gallons to take septic tank waste at its sewage treatment plant.
Permits & Local Rules
- How to apply at DOH-Clay: complete DEP Form 4015, the construction permit application, and turn it in with a site plan, a building floor plan and the fee. A qualified professional has to evaluate the site; DOH-Clay will do it for a fee, or the owner can hire a private provider. For reference, Rule 62-6.030 sets a $100 application fee for a new system and $115 for a site evaluation.
- Operating permits: DOH-Clay requires them for aerobic treatment units, performance-based treatment systems, commercial systems and septic systems on industrial or manufacturing zoned land. Rule 62-6.030 sets the state fee for a two-year aerobic or performance-based operating permit at $100.
- Pumping companies: Rule 62-6.010, F.A.C. says no septic tank may be cleaned or emptied until the service company holds a yearly septage disposal service permit, issued by DEP in the county where the company is located. Rule 62-6.030 sets that permit at $75 a year plus $35 for each pumpout vehicle.
- Trucks and logs: under the same rule the truck needs a tank of at least 1,500 gallons, inspected and approved by DEP before use, and must show the permit number, company name, phone number and tank capacity in permanent letters 3 inches or taller. Magnetic signs don't qualify. Each hauler keeps a collection and hauling log at its main office for five years.
- Separation: a new drain field needs 24 inches between its bottom and the water table at the wettest time of year (Rule 62-6.006). Repairs aim for the same 24 inches; where a site falls short, Table V in Rule 62-6.015 accepts 12 inches or the existing separation, whichever is more, on systems first permitted from 1983 on, and down to 6 inches on older permits.
- Setbacks in Rule 62-6.005: 75 feet from a private drinking water well, 100 feet from a public well serving 2,000 gallons a day or less, 75 feet from surface water, and 5 feet from building foundations and property lines.
- Sewer connection: s. 381.00655, F.S. gives a household 365 days to hook up once the sewer owner notifies it in writing that a line is available, and 90 days after notice from the department if the septic system needs repair. Abandoning the old tank takes a permit, $50 under Rule 62-6.030.
Soil & Site Conditions
- Basin plan: Clay County, CCUA, Green Cove Springs, Keystone Heights, Orange Park and Penney Farms are all listed as responsible entities in DEP's Lower St. Johns River Main Stem Basin Management Action Plan, a surface-water BMAP whose 2025 final order took effect November 25, 2025.
- What the BMAP changes: since July 1, 2023, section 403.067, F.S. bars a new septic system on a lot of one acre or less where central sewer is available, and where sewer is not available a new system there must be an enhanced nutrient-reducing design that removes at least 65 percent of the nitrogen. DEP's August 2026 table lists no such requirement for repairs to existing systems in surface-water BMAPs.
- Keystone Heights: minutes of the city's May 12, 2026 septic-to-sewer workshop say Section 9-154 of the city code creates a duty to connect once the city clerk gives notice and the property is within 200 feet of a sewer line. A CCUA project in the Doctor's Lake watershed, cost-shared with the St. Johns River Water Management District, moved homes from septic to sewer and was completed in 2023.
- Drainage varies: NRCS's Penney series, typed and established in Clay County in 1986, is excessively drained with rapid permeability. The Ridgewood series, also typed in Clay, is somewhat poorly drained, with a water table at 24 to 40 inches for 2 to 4 months or more in most years and brief rises to 15 to 24 inches.
- Wet ground: in the Meadowbrook and Goldhead series, both established in Clay County in 1986, NRCS describes a water table within 12 inches of the surface for long periods from late summer to spring, and Goldhead depressions stay under water 6 to 9 months in most years.
- Rain: the NOAA 1991–2020 normal at the Keystone Heights 3.5 ENE gauge is 53.72 inches a year, with June the wettest month (8.03 inches) and November the driest (2.12). The Green Cove Springs 6.8 SSE gauge averages 52.86 inches.
Communities Served
Middleburg · Green Cove Springs (unsewered areas) · Keystone Heights · Asbury Lake · Penney Farms · Fleming Island fringe · Lakeside · Bellair-Meadowbrook Terrace fringe
Emergency Response Expectations
Sewage in a tub or puddling over the field calls for less water use right away and an urgent request; arrival time is set by provider availability, not promised. Keep children and pets off the wet area. A field that floods every summer may be a water-table problem, and a repair permit from DOH-Clay comes before any new drain field goes in.
Clay County FAQs
Does DEP or the health department handle septic permits in Clay County?
The county health department, DOH-Clay, applies DEP's Chapter 62-6 rules to every application and inspection here. DEP itself permits only in the Northwest Florida counties and Marion County, and it says the rest will move only with legislative approval.
Who has to hold a permit for a routine pump-out?
The permit requirement falls on the pumping company: Rule 62-6.010 bars anyone from cleaning or emptying a septic tank without a septage disposal service permit from DEP, renewed every year. The permit number has to be permanently displayed on the truck.
We're building on a half-acre lot in Clay County. Can we use a standard septic system?
Not if the lot is inside the Lower St. Johns River BMAP area, which Keystone Heights, for one, says it is. There, state law bars a new septic system on a lot of one acre or less when central sewer is available, and without sewer the new system has to be an enhanced nutrient-reducing design that cuts nitrogen by at least 65 percent. Ask DOH-Clay whether the parcel is in the BMAP.
Does Florida still require a septic evaluation every five years?
No. Chapter 2012-184, Laws of Florida, approved April 27, 2012, deleted the provisions requiring owners to have their systems evaluated at least once every five years. DEP's owner's guide now recommends that a licensed service inspect and pump the tank every 3 to 5 years.
CCUA sent us a notice that sewer is available. What now?
State law gives a working septic system 365 days from the utility's written notice to connect; if the health department has notified you that the system needs repair, the deadline is 90 days. The old tank is then pumped and abandoned under an abandonment permit, which Rule 62-6.030 prices at $50.
Sources
- Florida DOH in Clay County: Onsite sewage (OSTDS)
- Florida DEP: Onsite sewage permitting FAQ
- Florida DEP: Onsite sewage program transfer (SB 712)
- Florida DEP: Form 4015
- Florida DEP: Septic system owner's guide
- Florida DEP: Lower St. Johns River Main Stem BMAP (2025)
- Florida DEP: BMAP documents and final orders
- Florida DEP: ENR OSTDS requirements by BMAP (Aug. 2026)
- Fla. Admin. Code R. 62-6.030 (fees)
- Fla. Admin. Code R. 62-6.010 (septage)
- Fla. Admin. Code R. 62-6.006
- Fla. Admin. Code R. 62-6.015 (Table V)
- Fla. Admin. Code R. 62-6.008 (Tables I, II)
- Fla. Admin. Code R. 62-6.005 (setbacks)
- Fla. Stat. s. 381.00655
- Laws of Florida ch. 2012-184
- Florida DOH: FLWMI, Clay County
- Florida DOH: Clay County wastewater map (2022)
- CCUA: Service charges and fees
- CCUA: Service area map
- Keystone Heights: Septic-to-sewer workshop minutes (May 12, 2026)
- Clay County Supervisor of Elections: Municipalities
- Florida Division of Historical Resources: Clay County marker
- Census 2020, Table P1: places in Clay County
- Census ACS 2024 1-year, Table B25034, Clay County, FL
- USDA NRCS: Penney series
- USDA NRCS: Ridgewood series
- USDA NRCS: Meadowbrook series
- USDA NRCS: Goldhead series
- NOAA NCEI: Monthly precipitation normals, Keystone Heights and Green Cove Springs gauges
- NOAA NCEI: Annual precipitation normals, Keystone Heights and Green Cove Springs gauges
- UF/IFAS: Septic systems maintenance fact sheet
- HomeAdvisor: Septic tank pumping and cleaning cost (updated June 17, 2026) (third-party estimate)
Last reviewed 2026-10-20
Nearby Counties
Services Available in Clay County
Septic Tank Pumping
Routine pump-outs on a 3–5 year schedule — the cheapest insurance a septic owner can buy. Get quotes from independent local pumpers.
Learn more →Septic Tank Cleaning
Full tank cleaning — scum, liquid, and the compacted sludge a quick pump-out leaves behind — from independent local septic pros.
Learn more →Septic Repair
Sewage backing up, alarm sounding, or drains crawling? Urgent routing to independent local septic repair pros who can tell a $300 fix from a $10,000 one.
Learn more →Drain Field Repair
Soggy yard, sewage odors, or drains that slow when it rains? Get a straight answer on repairing versus replacing your drain field from local pros.
Learn more →Septic Inspection
Buying a house on septic? An open-tank inspection with a written report is the cheapest protection against inheriting a five-figure drain field problem.
Learn more →Septic System Installation
New builds and full replacements — soil testing, county permits, and itemized bids from independent local septic installers.
Learn more →Aerobic Septic Maintenance
Aerobic systems need regular checks, chlorine, and — in Texas — a maintenance contract or approved owner maintenance. Get connected with independent local maintenance providers.
Learn more →Grease Trap Cleaning
Restaurant and commercial kitchen grease trap and interceptor pumping, on a schedule that keeps you under your city's 25% rule. Get connected with independent local pumpers.
Learn more →Free Tools Before You Call
Ballpark the cost or narrow down the problem before talking to a Clay County provider.
Septic Tank Pumping Cost Calculator
Estimate what pumping your septic tank should cost — by tank size, lid access, and how overdue you are.
Use the free tool →Septic Problem Diagnostic — What's Wrong With My System?
Sewage backup, alarm going off, odors, or slow drains? Answer a few questions to find the likely cause and how urgent it is.
Use the free tool →Septic Pumping Frequency Calculator — How Often Should You Pump?
Find out how often your septic tank actually needs pumping — by tank size, household size, and garbage disposal use — and whether you're already due.
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